PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218439.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 442aa    MW: 48255.3 Da    PI: 8.3241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218439.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-115277227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_008218439.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                    5799********************97 PP
2zf-CCCH38.81.5e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_008218439.1  98 QPECQYYLKTGTCKFGATCKFHHPR 122
                     799********************96 PP
3zf-CCCH34.72.9e-11146168527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++Ck++H++
  XP_008218439.1 146 ECAYYLRTGQCKFGSTCKYHHPQ 168
                     7********************97 PP
4zf-CCCH37.93e-12303329127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_008218439.1 303 PGQPECQFYMKTGDCKFGAVCRFHHPR 329
                     5789*********************96 PP
5zf-CCCH40.15.9e-13349375127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_008218439.1 349 PGEPLCIFYSRYGICKFGPSCKFDHPM 375
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15995123IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-695122IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6144169IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596302330IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6302329IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5308330IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709348376IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5351375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4353373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VALNILGYPL RPNEIECAYY LRTGQCKFGS TCKYHHPQPT NMMVSLRGSP  180
VYPTVQSPTT PGQQSYAGGI TNWSRASFIP SPRWQAPSSY APLIVPQGVV SVPGWSAYSG  240
QIGSVSSPES QQQPVGNSQI YGTSRQGEPE NSGSQGTFSP YRSGSIPVGF YALQRENVFP  300
ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPTPDCVL SPIGLPLRPG EPLCIFYSRY  360
GICKFGPSCK FDHPMGIFTY NPNASSSADA PARRLLGSTS ATTSLNLSSE GLVEAGSANP  420
RRLSLSEPRQ IPSGDDNIDT ED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218439.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGXP_008218439.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1