PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218281.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 354aa    MW: 39968.8 Da    PI: 10.1893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218281.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31292350259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp ++++tYegeH+h+
  XP_008218281.1 292 ADEYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERSLEDPAMLIVTYEGEHKHS 350
                     69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-13244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-33279350IPR003657WRKY domain
PROSITE profilePS5081129.953286352IPR003657WRKY domain
SuperFamilySSF1182902.88E-26289351IPR003657WRKY domain
SMARTSM007742.7E-38291351IPR003657WRKY domain
PfamPF031068.7E-27293349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDEVEEANKA AVESCHGVLS HLCQPKGQVH CKNLLAETEE AVFKFKRVVS LLGGGLGHGR  60
VRKLKKFKPP PLPQNIFLDG PNYRLDISTK PLQLLPPNSL ENRRAEKDSK YGSSLQHTHS  120
QKVFLGNPVV DLEMKIKLPL QIPKTKPLQQ YHFLEQKHDH QQEIQRLQLQ PQQLKYQADT  180
MYSGRNRGIN LAFDRSTTRT PSMSSARSFV SCLSMDGGVA NTHCDSFQLI RGVPQPPDRI  240
SQQQRRCNGA GENGTVKCGS SGKCQYPKKR KVRVKRSFKV PAISNKIADI PADEYSWRKY  300
GQKPIKGSPY PRGYYKCSSM RGCPARKHVE RSLEDPAMLI VTYEGEHKHS PSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21279349271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218281.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218281.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU62e-92WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLM5VYW10.0M5VYW1_PRUPE; Uncharacterized protein
STRINGXP_008218281.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.17e-69WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]