PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218252.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 606aa    MW: 65861.2 Da    PI: 8.0613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218252.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000436484323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k Fs+   L  H+r+H
  XP_008218252.1 64 CEVCNKGFSSGKALGGHMRMH 84
                    ********************9 PP
2zf-C2H215.74.2e-05136156323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  Cgk F++  +L  H+r+H
  XP_008218252.1 136 CCVCGKNFPSMKSLFGHMRSH 156
                     9*******************9 PP
3zf-C2H217.61e-05429451123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF+++  L  H+++H
  XP_008218252.1 429 YKCSLCGKSFPSHQALGGHMSSH 451
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7236289IPR007087Zinc finger, C2H2
PfamPF139127.7E-86284IPR007087Zinc finger, C2H2
SMARTSM003550.116284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.99E-56386No hitNo description
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432134161IPR007087Zinc finger, C2H2
SMARTSM003550.33134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-9136156No hitNo description
PfamPF139124.2E-6136158IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-9424451No hitNo description
PfamPF139128.8E-10428452IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-4429453IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.843429456IPR007087Zinc finger, C2H2
SMARTSM003553.7E-4429451IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280431451IPR007087Zinc finger, C2H2
SuperFamilySSF576679.9E-5518545No hitNo description
PfamPF139121.5E-11520544IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974521543IPR007087Zinc finger, C2H2
SMARTSM003550.062521543IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280523543IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDIEDQETRF RPRAGDQEQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF  60
TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKFQ KPTKILKPNN SDVSSSNGGG  120
GFGVEGNSNS SMKPDCCVCG KNFPSMKSLF GHMRSHPERE WRGIQPPPTI AKNSSSSTLS  180
DAVPQNNNKA DDHQIDSAAT PVGSNNSAPD LSKTLPGWSL TARRGRKSIG SSGNSESVSG  240
LDLSLGVEEQ MEEAVHDLLM LAQSNPRFYG LSDKGKGAEM CEATNSNFFI TNKSNQADYI  300
KDKNQVIDYE GTSKKRKGTE MCFPSKNMKS EKKWFDEYDG VKGKGVVGIG FGPEKSSVKN  360
FLKLGPMEDN KNNNIEEELS DSQNSESIVL ASMKRRKRRK MKLVDLEGVV GEIIGAQGHH  420
QSLHQKLRYK CSLCGKSFPS HQALGGHMSS HNKLKNNNNN NIIVNHSSLD DQSASADVSA  480
AEGGHNLDEA QTTMALDQDH HVAGAGSGSG AGGLGAHQAH HQCKICDKIF PTGQALGGHK  540
RCHWTGPTEQ LLLQSSQAAS PGETSQNAGR KVLNFDLNEL PAMEFEEGTD QYGAAGYATS  600
SHNSVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393399KRRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218252.10.0PREDICTED: uncharacterized protein LOC103318624
TrEMBLA0A251NJR10.0A0A251NJR1_PRUPE; Uncharacterized protein
STRINGXP_008218252.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-17C2H2 family protein