PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008218225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 369aa MW: 42376.6 Da PI: 5.1618 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 88.2 | 1e-27 | 114 | 214 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 +r+ws+eDe+ lL+ l+d ++g+ ++d+ fye vk +++++ ++ q+veK+rrLKkK+++ v+k ++gke++f+++hd+ +fel XP_008218225.1 114 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRVQMVEKLRRLKKKYHNVVNKmndmNSTGKEFRFKNPHDKVVFEL 208 58*****************9999999877888************************************9998887789***************** PP DUF573 92 skkiWg 97 s kiW+ XP_008218225.1 209 SDKIWN 214 *****7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-25 | 115 | 214 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MAWPPLLSWI LSSSSSSSSS SSSEYESDDN NDIEDLGGIN DVPDNVPKSQ NDNIDDHEND 60 DVSYEPQEED QNSNSTSDYT FTVSEPSAKR RRIDRTYEPA LTSEAPEENK KRRRKRVWSK 120 EDELELLRSL LDDYYSRGQI RTTVKDTASF YEEVKPKLKL ECNRVQMVEK LRRLKKKYHN 180 VVNKMNDMNS TGKEFRFKNP HDKVVFELSD KIWNVVDSHE DYAPNSKYVS ICNNVKVKKE 240 EDNVGSSSVA DHERPQKRHA WSHSRLTTTY DENNKAHDVL NDNGTTSSLD INNNNNNVDD 300 NMKKDIPGLI IEGVAMNPLP LSLSKFGSGA DEKWRKQQIL ELEAYSKRLD LVQHQVKAAL 360 DELRSKGVE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 88 | 92 | KRRRI |
2 | 108 | 115 | NKKRRRKR |
3 | 109 | 114 | KKRRRK |
4 | 109 | 115 | KKRRRKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008218225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008218225.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A251P170 | 0.0 | A0A251P170_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218225.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-20 | DNA-binding storekeeper protein-related transcriptional regulator |