PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057236-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 328aa    MW: 34821.7 Da    PI: 4.7686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057236-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18118168155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  PSME_00057236-RA 118 PVYRGVRMRT-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAARSIKG 168
                       68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-12118168IPR001471AP2/ERF domain
PROSITE profilePS5103222.721119176IPR001471AP2/ERF domain
SMARTSM003804.2E-36119182IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-21119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-31119177IPR001471AP2/ERF domain
PRINTSPR003674.6E-10120131IPR001471AP2/ERF domain
CDDcd000181.13E-30120178No hitNo description
PRINTSPR003674.6E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVRSSESESS PSSACCGLNE QQGHCCADYG PRGCINSCVC TPDLSVGNCI CNSSAAVNAA  60
ASTSGSSGSN SALVLMQNSS RKRRVAEIIN ADDSGEEESA VCDGEKQAGS RGKGNRHPVY  120
RGVRMRTWGK WVSEIREPKK KSRIWLGTFP TPEMAARAHD VAARSIKGKT AFLNFPNLAA  180
SLPRPATLSA KDIQAAAAAA AAEFQMPSDK DRSEDRSPDL GEMNTVIPIH ADTVIPAESR  240
NNDEAATAAA ACAASNSAWV PSFLSGNESM NLIDDDILFD LPNFLGNMAE GLLVAPPWLL  300
EQEELYANSY AADNVYEGNG AMSLWNHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18109177473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM171e-109B8LM17_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-44ERF family protein