PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00057104-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27270.3 Da PI: 5.5445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.2e-19 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr p g ++r++lg+++ +e+Aa+a++ a+++l+g PSME_00057104-RA 19 KYRGVRRRR-WGKWVSEIRQP---GTKTRIWLGSYDKPEMAARAYDVAALSLKG 68 8*****777.**********8...325************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 18 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 19 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 19 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-9 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-23 | 27 | 78 | No hit | No description |
PRINTS | PR00367 | 3.2E-9 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDYNVRKRIR SGEETHSRKY RGVRRRRWGK WVSEIRQPGT KTRIWLGSYD KPEMAARAYD 60 VAALSLKGKS ALPNFPHLIH ILPRPASLDP TDIQYAAAEA ATLSFNQHSP AKISESLPDF 120 LEHHSTSLVK FGESMEAAAT DENRHEPVQM NNNIKEADHH VADFVYCGHE TSDAVAEASS 180 SSLFDEGLQQ FDWPNFVMNM AEAPLLTPPR LDNLEAQDYF YDIDDWTDQP AGFGFLWGNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 19 | 77 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 26 | RKRIRSGEETHSRKYRGVRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 8e-24 | ERF family protein |