PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056989-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 67aa MW: 7865.88 Da PI: 8.0593 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.6e-08 | 17 | 50 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgk 33 r +WT+eEd++l ++++ +G + W+ +++ gk PSME_00056989-RA 17 RRAWTPEEDKILSQYIEIHGDHsVWANLPQKAGK 50 679*****************99999999999983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 12 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.005 | 12 | 51 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.17E-5 | 14 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 17 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.0015 | 19 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MGRPRRCRSS EEEVFNRRAW TPEEDKILSQ YIEIHGDHSV WANLPQKAGK SLIVIYQYCR 60 GRCDLGD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 4e-08 | myb domain protein 34 |