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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00056946-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 282aa MW: 31008.5 Da PI: 8.1053 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 24.2 | 7.6e-08 | 17 | 41 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
+W+tIa+ ++ gR+++ +k++w+++l
PSME_00056946-RA 17 RWSTIASQLP-GRSDNKIKNFWNSHL 41
5*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 13.013 | 1 | 45 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.47E-7 | 12 | 46 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 9.50E-5 | 17 | 40 | No hit | No description |
| Pfam | PF00249 | 1.6E-5 | 17 | 41 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 17 | 42 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 282 aa Download sequence Send to blast |
MIIKYFLQIR FYSCACRWST IASQLPGRSD NKIKNFWNSH LKKRLLKLGL DSSTHASKAE 60 GNPAASRVFK ALALTRHKAQ WENARLEAEA RLCRESLPSS SNSEAGYHIN NTVELTTPDD 120 NAPSDYFLKI WNSGTGKTFR NESSATTIID SCNNSFPAFD QNHPNGGGDD QVLSSQITKI 180 PRSGSGSVSS LPCVSTQLNC CGQYLNSNDK HKKNGSLQLQ CNSASYEWNG HCNVKISQTL 240 SGSDDMTMGE IEHKVPQAIS SSEELGSCTY ELHRLFGASG FP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G61250.1 | 4e-30 | myb domain protein 17 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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