PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056741-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Protein Properties

Length: 216aa MW: 24651.7 Da PI: 5.7613

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056741-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.6	7.9e-12	7	67	34	98
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +l+ +sg W v+l + + ++t+GW++Fv+++ +++ D++vF+++++ f v+vf PSME_00056741-RA 7 KDAILQGPSGHLWHVNL--CCADTLAFFTDGWENFVSDQSIEADDILVFRHVHDVHF--SVQVFG 67 57899**********..77777799*********************9998777..888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.561	1	69	IPR003340	B3 DNA binding domain
CDD	cd10017	1.76E-11	6	66	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.2E-15	7	71	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.7E-9	7	66	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.9E-16	9	71	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MHQGVCKDAI LQGPSGHLWH VNLCCADTLA FFTDGWENFV SDQSIEADDI LVFRHVHDVH 60 FSVQVFGPSG CEKHNSFFFQ NYTSCCFREG NLNPSRICNK KRCEHRQNFT TAYIPCLLDI 120 KSNRNGDIEV KGLKRDQNET ASDCRVELIN SSEINATDII MLPTEEQCIC KNEPSLYEEN 180 HPTLSAYREE PAPVGEEKIS LPHLTLRDKQ IFSSRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-11	B3 family protein