PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056491-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 218aa    MW: 23502.9 Da    PI: 9.2615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056491-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17120170255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +  k +r++lg+f t eeAa a+++a+ +++g
  PSME_00056491-RA 120 HYRGVRRRP-WGKFAAEIRDPAK--KGTRIWLGTFNTGEEAAVAYDRAAFRIRG 170
                       7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-31119179IPR001471AP2/ERF domain
PfamPF008475.2E-13120170IPR001471AP2/ERF domain
SMARTSM003802.4E-37120184IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23120179IPR016177DNA-binding domain
CDDcd000188.71E-29120178No hitNo description
PROSITE profilePS5103224.184120178IPR001471AP2/ERF domain
PRINTSPR003671.5E-10121132IPR001471AP2/ERF domain
PRINTSPR003671.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MFNMLELIRH HLLDVDEADN NIDHIIQHNA TAICISAEND DIQANAAATA TATATWSSGQ  60
HSSSSSTSQH TENVFTQQLS SSSSSVSGAV IRSAEAVKVN VKPQTHEEGN GEMNQSWARH  120
YRGVRRRPWG KFAAEIRDPA KKGTRIWLGT FNTGEEAAVA YDRAAFRIRG PKALVNFPLA  180
VSSNAENETA MGSGANKRKR RNGGGGRCVV GRATGSVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-32119183468ATERF1
3gcc_A3e-32119183468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ72e-56A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-33ethylene responsive element binding factor 1