PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056426-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 441aa    MW: 48667.4 Da    PI: 6.7894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056426-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-1981131155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++  +g+WvAeIr+p   + r +r +lg+f taeeAa a+++a++ l+g
  PSME_00056426-RA  81 CNYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATAEEAALAYDKAARTLYG 131
                       56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-3081141No hitNo description
PfamPF008473.0E-1381131IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2182140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3082140IPR001471AP2/ERF domain
PROSITE profilePS5103221.93182139IPR001471AP2/ERF domain
SMARTSM003803.4E-3582145IPR001471AP2/ERF domain
PRINTSPR003672.2E-108394IPR001471AP2/ERF domain
PRINTSPR003672.2E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRCGGRRINS TATASTSTTT FDNNNNNDDN GGGFCRMLSS SIHNKDFTGF SAPKKQIRKI  60
PAKGSKKGCM KGKGGPENSL CNYRGVRQRT WGKWVAEIRE PNRGARLWLG TFATAEEAAL  120
AYDKAARTLY GSCARLNLPD TRLNNESGPQ NDTNLSSFNG SAASTNCSTD APERTFHLSS  180
SATKRRSSHH HLPSKVCFDR NVVRQSFRDQ DHNINNNSGQ LQHFSDSVNS GSLDSVSASN  240
YDGEVHGNHH HHHSAAIVAA TANSNSNSSG NDNNNNHNDH TKVRKLVGFE DLTAGKVGTR  300
PQFSADHIRP GIDPLEQHEG DNLINSEWSN LTASLDCSLA SNTESEIRRN EIKYDLPLGE  360
ILLDNQDLEL MDSAWPTLQA LPPPLELPPL EDFAAYKMQV GEDELKMEGL MPSMKSADIT  420
RSRNWQADAY DPFHLSWCFY D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1982139260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.15e-24ERF family protein