PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056171-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TCP

Protein Properties

Length: 468aa MW: 50714.8 Da PI: 7.1024

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056171-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118	1.2e-36	143	213	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +kk++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as++ PSME_00056171-RA 143 KKKSSCKDRHTKVDGRGRRIRMPAACAARIFQLTKELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAA 213 699999***********************************************************999766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-31	147	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.374	148	202	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MANLLTSGYT SIFIVSFGVT LQAAAIFVCK TLLAVQKPVD SFASRCRLSS KSFVFVHSGL 60 RVYAADKTEK RDNSYGEDIE QRLRGSTESY VKAMHAEMDA ERVGSGSSSR AIAEDLETMS 120 GTPIPSSSTG SDLQGTNQQG IVKKKSSCKD RHTKVDGRGR RIRMPAACAA RIFQLTKELG 180 HKSDGETIQW LLQQAEPSII AATGTGTIPA SAAAMAASIG ESGNLLTDPP YGSLGFTARG 240 VSGDMILDHF ERRSLMQGAG GHEVGRFQNE GFVDEGLEMR RLREEKGIQL GHMQRNVELS 300 ERRLSVLSAA SRHFSMHESP SEGLSQIWTD SPMYRMTPEP PPSASAASIQ AGSGHITCSN 360 AMTPLTTYLL PSAMDRMPGI NLSGLELQSG HMGHMPLSAM LLQQQQQGSQ HEQHLVGVQA 420 REGQIGIIAS GSTYNNSMRS TTQDYGHHHH HHYPHEASGQ ENSYDQNP

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MANLLTSGYT SIFIVSFGVT LQAAAIFVCK TLLAVQKPVD SFASRCRLSS KSFVFVHSGL  60
RVYAADKTEK RDNSYGEDIE QRLRGSTESY VKAMHAEMDA ERVGSGSSSR AIAEDLETMS  120
GTPIPSSSTG SDLQGTNQQG IVKKKSSCKD RHTKVDGRGR RIRMPAACAA RIFQLTKELG  180
HKSDGETIQW LLQQAEPSII AATGTGTIPA SAAAMAASIG ESGNLLTDPP YGSLGFTARG  240
VSGDMILDHF ERRSLMQGAG GHEVGRFQNE GFVDEGLEMR RLREEKGIQL GHMQRNVELS  300
ERRLSVLSAA SRHFSMHESP SEGLSQIWTD SPMYRMTPEP PPSASAASIQ AGSGHITCSN  360
AMTPLTTYLL PSAMDRMPGI NLSGLELQSG HMGHMPLSAM LLQQQQQGSQ HEQHLVGVQA  420
REGQIGIIAS GSTYNNSMRS TTQDYGHHHH HHYPHEASGQ ENSYDQNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-38	TCP family protein