PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056087-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 543aa    MW: 60654.1 Da    PI: 9.3208
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056087-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.4e-30250338185
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k ltpsdv+k++rlv+pk+ ae++        +e++  l +ed +g++W+++++y+++s++yvltkGW++Fvk+ +L+egD+v F+++
  PSME_00056087-RA 250 FEKPLTPSDVGKLNRLVIPKQQAEKYlpldtA-ANEKGLLLNFEDNTGKEWQFRYSYWNSSQSYVLTKGWSRFVKEMKLEEGDIVSFHRT 338
                       99**************************9953.4467889***********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-40240360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-29247342IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-27248337No hitNo description
SMARTSM010198.8E-23250351IPR003340B3 DNA binding domain
PfamPF023627.0E-27250339IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902250353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRMGTEDIRD DHAAALLQKV TKHGRAIKTV ALGGLREGTQ RQTRVSFLDC SSPAGEMQEK  60
DGERYSNLEK MKSKKNVLSR AYGRDSSDSG GEDTRRKFIN APSESTGVRQ YKGMVPQPNG  120
RGSAQIYEKR QRIWPGTFNG EDQSSSNAIA AFKFDALTEL KPQALEVGHV ETRFLSLHSK  180
REVLDMLISD HTYEEEPGNC KNNDASRCSE TDQEEEENCQ GAERNYYNYN PGGVGNDKKA  240
ASSWGREHMF EKPLTPSDVG KLNRLVIPKQ QAEKYLPLDT AANEKGLLLN FEDNTGKEWQ  300
FRYSYWNSSQ SYVLTKGWSR FVKEMKLEEG DIVSFHRTTH KDPILQRLFI SYRWKPCSEA  360
QATGLPGSIF KSPLQWSSPF QFPSTAINNI GGASHAKQLA VTSRALIGPQ WTPLLRPTNN  420
VIASRGATET RINLQKNAQP MDLLSSLHLI TTDDQLRKRK GIHDSGFPFS IQRLSNTTVA  480
DTMNWLKAPR LSAMQLKAPG SFPDDLSAAT GFDHSTSTCT STSVPTSKKV VRLFGVNLEC  540
GKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-502463564114B3 domain-containing transcription factor NGA1
5os9_B3e-502463564114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026407817.11e-71AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A0D6QRH46e-70A0A0D6QRH4_ARACU; Uncharacterized protein
TrEMBLC7DYD71e-70C7DYD7_CAMSI; RAV transcription factor
STRINGXP_010262942.11e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-67ethylene response DNA binding factor 3