PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055549-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 150aa    MW: 16624.9 Da    PI: 4.8263
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055549-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.34.9e-2817111599
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++   +++++ ++f ++h++FGa nv+kl+++lp +++ da++s+vyeA ar++dP  G++g++++lq q+++l++++ ++
  PSME_00055549-RA  17 CKMEQKECLDNCAILYRLASNDLHNFSILHQVFGACNVIKLIQDLPSDQKADAINSMVYEASARIQDPAFGCAGIVQQLQLQISELQSQITAT 109
                       *****************************************************************************************9988 PP

            DUF260  98 ke 99 
                       ++
  PSME_00055549-RA 110 QA 111
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.99412113IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-2716110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMTNATEKPS AAFHDQCKME QKECLDNCAI LYRLASNDLH NFSILHQVFG ACNVIKLIQD  60
LPSDQKADAI NSMVYEASAR IQDPAFGCAG IVQQLQLQIS ELQSQITATQ AVIQKIRSQQ  120
AQLLAFIPAG FKIKFNPTIS TSLNDSDDEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2331105108LOB family transfactor Ramosa2.1
5ly0_B2e-2331105108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U31e-66A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.19e-27LOB domain-containing protein 11