PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00055474-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 225aa MW: 25411 Da PI: 7.9325 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 419.4 | 5.9e-129 | 2 | 218 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpa+g++w+qdycs fh +la neg+pg++pvlrp+gidlkdg+lfaalsak++gk vgipecegaatakspwna PSME_00055474-RA 2 PPPAAFLGPKCALWDCSRPAKGTKWCQDYCSDFHMNLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTHGKVVGIPECEGAATAKSPWNAY 94 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkprr fesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00055474-RA 95 ELFDMYVLEGESMREWLFFDKPRRDFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 187 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00055474-RA 188 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 218 *****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
CPPPAAFLGP KCALWDCSRP AKGTKWCQDY CSDFHMNLAS NEGAPGMRPV LRPGGIDLKD 60 GPLFAALSAK THGKVVGIPE CEGAATAKSP WNAYELFDMY VLEGESMREW LFFDKPRRDF 120 ESGNRKQRSL PDYSGRGWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA 180 CALYRLELKM VCSKKNTKGK VGGDPLVDLQ HQLGKLSAEF SWVAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657013.1 | 1e-131 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_019079230.1 | 1e-131 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-125 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A443PFT3 | 1e-130 | A0A443PFT3_9MAGN; Transcription factor VOZ1 | ||||
TrEMBL | A5CA22 | 1e-129 | A5CA22_VITVI; Uncharacterized protein | ||||
TrEMBL | F6H4X2 | 1e-129 | F6H4X2_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g02670.t01 | 1e-130 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-128 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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