PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055468-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 292aa    MW: 32308.1 Da    PI: 4.7327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055468-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141489148
                      TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT  Ed +l ++++ +G++                             tW++Ia +++  Rt++++k++w+++l
  PSME_00055468-RA 14 RGAWTVKEDMILSEYIRIHGNDggwanlpmmvdgrispqkqvilclsllmqTWSLIAGRLP-ERTANEIKNYWNTHL 89
                      89***********************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-18593IPR009057Homeodomain-like
PROSITE profilePS5129411.236993IPR017930Myb domain
SuperFamilySSF466891.34E-81285IPR009057Homeodomain-like
SMARTSM007171.5E-91391IPR001005SANT/Myb domain
PfamPF002491.8E-111489IPR001005SANT/Myb domain
CDDcd001671.67E-71689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSSPCCSKE GLNRGAWTVK EDMILSEYIR IHGNDGGWAN LPMMVDGRIS PQKQVILCLS  60
LLMQTWSLIA GRLPERTANE IKNYWNTHLS KKLLLMNQSS TTATNLKRRS KSPSIVHNHV  120
LNTGPVKKTT VVTQSQMVRS NSFNVYGCSN RDSHEGCKSC NVKESMNSSK PFSDLTAGTD  180
LITNNDSQPI ESKESRNSTA SMSSLVESGR SPDSESCGGD ATSLAESLVD LNELSTPDCN  240
LLSYPSEFCT EFGLEEFYTE PATLAAEAIF ELDFNGNTQD LDWIFELDYT QK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9111e-80A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-27myb domain protein 3