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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00055304-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 290aa MW: 32123.5 Da PI: 5.6118 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 24 | 8.8e-08 | 2 | 24 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
+ W++Ia+ ++ gRt++++k++w +
PSME_00055304-RA 2 P-WSLIAAQLP-GRTDNELKNYWKT 24
5.*********.***********86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.699 | 1 | 30 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.81E-6 | 2 | 33 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.1E-10 | 3 | 30 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.04E-5 | 3 | 24 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 290 aa Download sequence Send to blast |
MPWSLIAAQL PGRTDNELKN YWKTCIKKKL NLKHHLSCSS SSFSSKSNVT DTISHIRTQS 60 NSNSVSDDAH HVITSSQSFQ QCMDVLPEGS QPPNNAFNVV NNGENLWCVP GVMDSRHIQL 120 EDQIDHEFSV DPNPTNNQEI CYTNLWSNAS SLHIQEGFSS PAAFISPSLH AKWSTSDQLI 180 LDSCSNTTLR HHKAHCFPDI SLGLTGINIP ALIESDSAKG KLENDENHIM IDYSNATDSS 240 DIVDPGRAYT SHEGGVSILD KYYGSLCQLY SALNPHYQFS WPAGEFSQIP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16720.1 | 2e-07 | myb domain protein 7 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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