PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054862-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 294aa MW: 33101.2 Da PI: 4.8692 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 414 | 2.8e-127 | 71 | 287 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdy s fh +la neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00054862-RA 71 PPPAAFLGPKCALWDCSRPAQGTKWCQDYFSDFHMNLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 163 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkpr+afesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00054862-RA 164 ELFDMYVLEGESMREWLFFDKPRQAFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 256 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00054862-RA 257 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 287 *****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
NIEHQENNNY VQTSEQLPPN IVEGLEVTSG LEGGQINFHQ DYIPATQLIF TLTGEEETSP 60 FFNGPQPGLC PPPAAFLGPK CALWDCSRPA QGTKWCQDYF SDFHMNLASN EGAPGMRPVL 120 RPGGIDLKDG PLFAALSAKT QEKAVGIPEC EGAATAKSPW NAYELFDMYV LEGESMREWL 180 FFDKPRQAFE SGNRKQRSLP DYSGRGWHES RKQVIKDFGG LKRSYYMDPQ PSTQFEWHLY 240 EYEINDCDAC ALYRLELKMV CSKKNTKGKV GGDPLVDLQH QLGKLSAEFS WVEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260370.1 | 1e-137 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-124 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1U8A0G4 | 1e-136 | A0A1U8A0G4_NELNU; transcription factor VOZ1 | ||||
STRING | XP_010260370.1 | 1e-137 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-127 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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