PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054753-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 215aa    MW: 23934.4 Da    PI: 7.703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054753-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-1535123198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv   + +++s+ l +p +f+++++      k+ +l+ +sg  W v+l+  ++  +  +t+GW++Fv+++ +++gD++vF+++++  f   
  PSME_00054753-RA  35 FFKVI--ETNSSSC-LGIPTDFVKRMQCG--VCKDAILQGPSGHLWHVNLCCANTLAS--FTDGWESFVSDQFIEAGDILVFRHVDDVHF--A 118
                       67777..5666666.********999433..4579***************77777655..9**********************9987777..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v++f 
  PSME_00054753-RA 119 VQIFG 123
                       88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.2832125IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-2033127IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-1634122No hitNo description
Gene3DG3DSA:2.40.330.101.7E-1934127IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-1235122IPR003340B3 DNA binding domain
SMARTSM010195.4E-835125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPKVKTTETL RTCTACIEKC IASFHAPFHW SGTSFFKVIE TNSSSCLGIP TDFVKRMQCG  60
VCKDAILQGP SGHLWHVNLC CANTLASFTD GWESFVSDQF IEAGDILVFR HVDDVHFAVQ  120
IFGPSGCEKQ STFSFQNYTS CCFREKNLNL STICNRKRCK HRRKSTSASV FSMGEPYICE  180
NKASLCEKYD PTVCACTQVA PVGEEKISLP HLTLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1V1FSR83e-24A0A1V1FSR8_CRYJA; AP2/B3-like transcriptional factor family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-13B3 family protein