PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054567-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 248aa    MW: 27540.4 Da    PI: 8.7474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054567-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.44e-274101193
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     +++q++++++++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+ G +g++l++++ ++
  PSME_00054567-RA   4 SCNGCRVLRKGCSESCILRPCLnwintAESQANATRYLAKFYGRAGLTNLISNGPEHSRPAIFRSLLYEACGRILNPIDGLLGLLLSGNWAVC 96 
                       6*********************9999778999************************************************************* PP

            DUF260  89 qlkae 93 
                       ++ +e
  PSME_00054567-RA  97 EAGVE 101
                       98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1523109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-214101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCSESCI LRPCLNWINT AESQANATRY LAKFYGRAGL TNLISNGPEH  60
SRPAIFRSLL YEACGRILNP IDGLLGLLLS GNWAVCEAGV ESILLGTFPA CTWADFSCDI  120
LGTARQELQR SVRPIGRFKQ LPDSKGRRKE RKLVPAISKS TKSDDLANIT NALDKAKFKA  180
KFKAKFNDKY IEKYSTLVSR QELHEFVSAH QTQTEYGDDQ CNLKTSQETD AEVPCNEVGL  240
ELRLGSQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145152GRRKERKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-52LOB domain-containing protein 42