PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054473-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 544aa    MW: 61067.9 Da    PI: 6.7995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054473-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.7e-21174223255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+++++g
  PSME_00054473-RA 174 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAARAYDNAALRFRG 223
                       7********.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-14174223IPR001471AP2/ERF domain
PROSITE profilePS5103225.804174231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-33174233IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23174233IPR016177DNA-binding domain
SMARTSM003803.6E-37174237IPR001471AP2/ERF domain
PRINTSPR003671.1E-11175186IPR001471AP2/ERF domain
CDDcd000184.42E-29182232No hitNo description
PRINTSPR003671.1E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MERKKQSRES STDPDRHAGN AGRIPGLRIA TDSEEEMSTI VQALVRVMHD GGDQSTTHEI  60
CSQSSMSMPD QTLTNISDGP KRSREEYGTS CINLGVKTPQ HSSSGSDLLR ETEMSDAKRS  120
SFRQLTHARS HSSDSVAEAE QAEKCGEIKD HSSAAMTVDV PTSEQIKEAT KRRRYRGVRQ  180
RPWGKWAAEI RDPKKAARVW LGTFDTAEDA ARAYDNAALR FRGPRAKLNF PDEAIARNQL  240
TDPVNLPVLA ERTTQTALAS AEYFPFRPPS TFLRPTANFQ QPSLTFTSTN LVDPFSFPRV  300
CASQGSLHLP LFSSPQCSML STRLEVRPWH QYVFSQQNQQ AIGLNPEEGS SIGMTHPISL  360
TSSPTVSFSD QPNQGNLAMA REIERRRFLL NPFNTTGTMF ERQLASTLYE LPSTIYPQQY  420
FIQTEGMQRP RIPEGSETIH PQQYFIPTEG TTQRPRIPEG SETIHPQQYF IPTEGTTQRP  480
RLPEESETIY PQQYFIPEGR QIRPTLLEGS ESSTERRPQG RPYTSTFGQM DISSTTTTTT  540
PDIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24171231263ATERF1
3gcc_A4e-24171231263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-25ethylene response factor 110