PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054338-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 28620.8 Da PI: 9.7679 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 1.9e-08 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k C + ++GtC++Gd+C+F Hgp PSME_00054338-RA 130 KPFVCYQWEANGTCSFGDNCRFPHGP 155 5568******************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.06E-5 | 40 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.723 | 42 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.18 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-10 | 42 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-8 | 124 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 126 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-5 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-6 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDPQPERGIS ENSEKRNNEF DGSGREEIGH GAFAAERRNV HLHKTQICFK FTAGKCNFKS 60 CRFAHGREEL RQPFRNVQRI SAEDEQESHR TRNAKRLRGD DSAPRDSEAI SVATTSGSSE 120 GVLQRPNFKK PFVCYQWEAN GTCSFGDNCR FPHGPRKLAD SLEGLKNGES ATSNWKQGIS 180 NMRSQSVFKQ GGSPPKLQTQ NVDRVTGKKA FVVPIEKPME INGGPTQAQP GKKGPATWKW 240 PQKISRIYGD WIDEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 5e-24 | C3H family protein |