PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053665-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 293aa    MW: 33172.3 Da    PI: 7.5002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053665-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-06132151120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C+ksF+r  n++ H+
  PSME_00053665-RA 132 FSCPVCSKSFNRYNNMQMHM 151
                       89*****************9 PP
2zf-C2H214.30.00011216238123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cgk F  + + ++H +++
  PSME_00053665-RA 216 FVCRRCGKAFAVRGDWRTHEKNC 238
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-6132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.24E-8132154No hitNo description
SMARTSM003550.061132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
PROSITE profilePS508688.069174190IPR003616Post-SET domain
SMARTSM00355210179211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-6202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.24E-8211236No hitNo description
PROSITE profilePS501578.683216236IPR007087Zinc finger, C2H2
SMARTSM0035569216236IPR015880Zinc finger, C2H2-like
SMARTSM00355130242265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTETCINPSS SSSLMHLVNL DQYPFLCYKP SERCDSPPLR EALPLLSLSP PRPSETASIH  60
AGGREFETDE DVTVALQIGL PNNDTSYSKP LNADSVDTAD MENLEQGGRR ILAEGQYWIP  120
TPSQILIGPT QFSCPVCSKS FNRYNNMQMH MWGHGSQYRR GPESLRGTQP TAMLRLPCYC  180
CAEGCRNNIN HPRAKPLKDF RTLQTHYKRK HGTKPFVCRR CGKAFAVRGD WRTHEKNCGK  240
LWFCVCGSDF KHKRSLKDHI RAFGHGHAPH HGDLHTFEDE DPASEIEQDD ETQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246927.11e-130PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0311e-117ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A1U7Z1K61e-129A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRINGXP_010246927.11e-130(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]