PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053529-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 689aa    MW: 77599.6 Da    PI: 6.0975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053529-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix963.4e-30151235187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+++e+laL+++r+em+ ++r+++lk+plWe+vs++++e g++r pk+Ckek+en++k+yk+ ke++ +r++++s  +++f+qlea
  PSME_00053529-RA 151 RWPREETLALLKIRSEMDANFRDASLKGPLWEHVSRRLEELGYHRDPKKCKEKFENIHKYYKRSKERRVGRHDGKS--YRFFNQLEA 235
                       8*********************************************************************866666..*******85 PP
2trihelix104.38.7e-33462547187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k+ev +Li+ar+ m++r++++  k+plWe++s +m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a
  PSME_00053529-RA 462 RWPKSEVIELIKARSGMGTRFQETGPKGPLWEDISLHMKSLGYNRNAKRCKEKWENINKYYKKTKESNKKR-PENSKTCPYFQQLDA 547
                       8*********************************************************************8.9999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0012148210IPR001005SANT/Myb domain
PfamPF138373.2E-21150236No hitNo description
CDDcd122033.08E-25150215No hitNo description
PROSITE profilePS500906.829150208IPR017877Myb-like domain
SMARTSM007173.6E-5459521IPR001005SANT/Myb domain
CDDcd122032.36E-28461526No hitNo description
PfamPF138371.7E-21461548No hitNo description
PROSITE profilePS500907.224462519IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MQASGVQYGL ADVSQFMVGI RGPSPRVHNI FQLVSSSSSD QQQYSSQQQQ QQQQHVPKNH  60
QQQQLRQQEH LKDQMVAPAE KVGEGTAYNS PCKQLEPSPI SAQQVQAAGN ISTTDKASSS  120
GVAAAGDDDV FGGGEDCERL AGAGGGSAGN RWPREETLAL LKIRSEMDAN FRDASLKGPL  180
WEHVSRRLEE LGYHRDPKKC KEKFENIHKY YKRSKERRVG RHDGKSYRFF NQLEALYSNN  240
IDKPPYNSNK AINDASTISN GDGRVQAHED PISSKQNEDI NNLQGNFMVG TTNAATTDLN  300
SSEGISFSSD SSEDYDEPRD SNNNKRKRSG TKKLMAFFEN LMKQMMEKQE QMQQKFLEAI  360
EKREHDRMIR EEAWKRQEMA RLNRDQELRS QERSVAASRD LALVSFLQKI TGQTLQLDTQ  420
LVDSSQIPNP IPNPGDQEQE QEQDLHDEQD KDLSCTDPNS RRWPKSEVIE LIKARSGMGT  480
RFQETGPKGP LWEDISLHMK SLGYNRNAKR CKEKWENINK YYKKTKESNK KRPENSKTCP  540
YFQQLDALYR KGILSNPNKV IQMHDEDNQP DDEDHQEELL EQVSGSNIRE DSAQGQGADG  600
DGDGEILPVR PPPPPHSDSS ALPQTPTSNA VPATLFSTPD SRNADNGSLT KDSLKREGLL  660
MKEILGHMQS TPAPRHDTQS ALEAGQFWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0708970.0BT070897.1 Picea sitchensis clone WS02758_I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359363.11e-146trihelix transcription factor GTL1-like
TrEMBLA0A2K1ISI31e-145A0A2K1ISI3_PHYPA; Uncharacterized protein
TrEMBLA9SJK21e-146A9SJK2_PHYPA; Predicted protein
STRINGPP1S85_58V6.11e-146(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-88Trihelix family protein