PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053123-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 442aa    MW: 49582.4 Da    PI: 5.7742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053123-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68.1e-56201481129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhP deelv++yL++kv ++++++ ++++evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++gyWkatgkd+e++
  PSME_00053123-RA  20 LPPGFRFHPMDEELVTYYLTQKVLDSSFNC-RAVAEVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGYWKATGKDREIY 111
                       79****************************.88***************99999**************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  ++ lvg+kktLvfykgrapkgekt+Wvmheyrle
  PSME_00053123-RA 112 RGkTNILVGMKKTLVFYKGRAPKGEKTSWVMHEYRLE 148
                       9645556****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-6013172IPR003441NAC domain
PROSITE profilePS5100558.59420172IPR003441NAC domain
PfamPF023653.8E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEEANVNSKQ QMNKMDDEIL PPGFRFHPMD EELVTYYLTQ KVLDSSFNCR AVAEVDLNKC  60
EPWDLPGKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGY WKATGKDREI YRGKTNILVG  120
MKKTLVFYKG RAPKGEKTSW VMHEYRLEGK FLYYDLPKTA KDEWIVARIF QKSSGAKKGP  180
LGLGRSSSFL NDLDSPNLPP LSDSPYIPNS MGGGLSFESE SAGSAMDSQQ PVNCFSIQGY  240
TNDNQGFRMP PNQALQNLGS ISSDTVDFQY IQNMLMGMNA NSSPTQMQPQ MPNYPQLPTY  300
SMGPNSNFPI YSNPHYPSGS HPNSYILKAQ SDIANERFKQ CKMEPPSPFN ASGTLKNLPV  360
QPGSSQWIST SGGYQQQNQD NLEPKYGVPQ QQMQNPAMVS LSQETGLSSE INADMSSVVS  420
SQPSQQYHEE GTDMESLWNS LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51101787171NO APICAL MERISTEM PROTEIN
1ut4_B4e-51101787171NO APICAL MERISTEM PROTEIN
1ut7_A4e-51101787171NO APICAL MERISTEM PROTEIN
1ut7_B4e-51101787171NO APICAL MERISTEM PROTEIN
4dul_A4e-51101787171NAC domain-containing protein 19
4dul_B4e-51101787171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1082091e-101BT108209.1 Picea glauca clone GQ03118_G07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG8CPZ01e-110G8CPZ0_PICAB; Cup-shaped cotyledon
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.12e-93NAC family protein