PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053112-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 286aa MW: 32231.8 Da PI: 5.7099

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053112-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	392.1	1.3e-120	48	279	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna. 92 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++pvl p+gidlkd +lfaalsak+q k vgipecegaatakspwna PSME_00053112-RA 48 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLHPRGIDLKDVPLFAALSAKTQEKAVGIPECEGAATAKSPWNAy 140 89***************************************************************************************95 PP VOZ 93 ..............aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlye 171 +lfd+ +lege++rewlffdkprrafesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlye PSME_00053112-RA 141 amvyifavymmvpvEQLFDMYVLEGESMREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYE 233 55444444444433369************************************************************************ PP VOZ 172 yeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yein++da+alyrlelk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00053112-RA 234 YEINDCDACALYRLELKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 279 ******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTENLVPWCS SNTTGNQDYI PAVEPIFTLI GEEETSPVFN GPQPGLCPPP AAFLGPKCAL 60 WDCSRPAQGT KWCQDYCSDF HMTLASNEGA PGMRPVLHPR GIDLKDVPLF AALSAKTQEK 120 AVGIPECEGA ATAKSPWNAY AMVYIFAVYM MVPVEQLFDM YVLEGESMRE WLFFDKPRRA 180 FESGNRKQRS LPDYSGRGWH ESRKQVIKDF GGLKRSYYMD PQPSTQFEWH LYEYEINDCD 240 ACALYRLELK MVCSKKNTKG KVGGDPLVDL QHQLGKLSAE FSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	1e-127	PREDICTED: transcription factor VOZ1
Refseq	XP_019079230.1	1e-127	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-119	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A5CA22	1e-125	A5CA22_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	1e-125	(Vitis vinifera)
STRING	XP_010260370.1	1e-125	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-122	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]