PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052795-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 36399.7 Da PI: 7.0652 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.8e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WTt Ed +l ++++ +G + Wk + + g++R++k+c++rw++yl PSME_00052795-RA 14 RGAWTTKEDMILSEYIETHGDHaGWKNLPLKAGLKRSGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++Edel+++++++lG++ W++Ia +++ Rt++++k++w ++l PSME_00052795-RA 68 RGNISPDEDELIIRLHRLLGNR-WSLIAGRLP-ERTGNEIKNYWKTHL 113 7899******************.*********.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.983 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-24 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.039 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGQSPCFSKE RLNRGAWTTK EDMILSEYIE THGDHAGWKN LPLKAGLKRS GKSCRLRWLN 60 YLRPDIKRGN ISPDEDELII RLHRLLGNRW SLIAGRLPER TGNEIKNYWK THLSKKLLLM 120 NQSQPNSGTE NLKKRRSNSP SSLQNHVYIP TPARIITAAS QSEIVRSNGF NGSECSIRNS 180 RKDIGSCNAK ETRNSSKSLS DLLLRDSITY DEGRSSTCPM LTLVNARLSL SDCFATEVGV 240 FGETLLDWSE LSSPDCNLLS SPLEYFQDFG VEEFFTGSVT SAAETIEFEV SCSDQTNMQR 300 TNSFAFSDGP GVDDFDGNRI HGLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-19 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9S9K9 | 9e-55 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 1e-108 | A0A167V911_PICAB; Transcription factor MYB31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-57 | myb domain protein 3 |