PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052786-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22610.7 Da PI: 9.6715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 27 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg W+++Ed +l ++++++G g W++ ++ g gRt++++k++w+++l PSME_00052786-RA 27 RGTWSAQEDMILSEYIRLHGDGGWRKLPQNAGrlPGRTDNEIKNHWNTHL 76 89*********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 18 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-14 | 21 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.227 | 22 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-12 | 26 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 27 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-11 | 29 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
LWSKWSNRSR ISNIVRSPCC SKEGLNRGTW SAQEDMILSE YIRLHGDGGW RKLPQNAGRL 60 PGRTDNEIKN HWNTHLSKKV SINRSQTNNR QNLINTCSKS PSVIKNHVLK TSTPIRIKSN 120 YWVKHSEMVK VQMDGTVLAA VMDSWCNLLV NNSIREDDLA VTNPGLDVNL VQIQDVTKFS 180 CSMFTSLAVQ QSPHCDDFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-36 | B8LMJ6_PICSI; Uncharacterized protein | ||||
STRING | XP_010047497.1 | 2e-22 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-22 | myb domain protein 3 |