PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052716-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 322aa    MW: 36078.5 Da    PI: 9.0177
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052716-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.76e-3140138197
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       aC aC++lrrkCa++C++apyf +++  + +++++h +FG+s+  kll ++pe++r+ a+s++++eAe r+r Pv+G++  i +l++++++l+
  PSME_00052716-RA  40 ACGACQFLRRKCAQSCIFAPYFSSKEtgSDQYRAIHSVFGTSHFAKLLLEVPEDQRHVAASTILFEAERRLRYPVHGCYTNIYALREEIKNLN 132
                       7*********************88774569*************************************************************** PP

            DUF260  92 aelall 97 
                       +ela++
  PSME_00052716-RA 133 EELAAA 138
                       ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.52639142IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-3040137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNTSTNYLNP FPKYRKTAKC LNLLWRRSLK SEEEKAINMA CGACQFLRRK CAQSCIFAPY  60
FSSKETGSDQ YRAIHSVFGT SHFAKLLLEV PEDQRHVAAS TILFEAERRL RYPVHGCYTN  120
IYALREEIKN LNEELAAAYG ELAACGGLDG ATINTGQYVN NHIPEHVHLD EQQSIPSQNC  180
AVNNVHAEST MMDEGSNYSA VRLPAQQSMS RDKSNLNTTS GQQNLPSQHS MSRDMNNLNT  240
TSGQQNLPSQ QTMRNYMSSI NATSGKQKFV MERISLGPSG QQNLPSQQTK RNYMSSINAT  300
SGKQKFVMER ISLGQLARNG ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-264115012121LOB family transfactor Ramosa2.1
5ly0_B2e-264115012121LOB family transfactor Ramosa2.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-30lateral organ boundaries-domain 16