PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052557-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | Trihelix | ||||||||
Protein Properties | Length: 166aa MW: 18729.2 Da PI: 6.5019 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.6 | 1.2e-16 | 90 | 162 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+++v++Li+++ ++++++ ++ +W+ vs+ m+++gf++sp+qC +k+ l kryk++++ + t es+++c PSME_00052557-RA 90 WTNHKVRHLIQVVCNVDKEFTKE-----KWKYVSELMMQKGFSVSPQQCLDKFHVLVKRYKRMNDLLGIDTHESHTNC 162 ******************99876.....*************************************9998877777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.160.20.10 | 1.6E-5 | 2 | 32 | IPR012334 | Pectin lyase fold |
SuperFamily | SSF51126 | 3.34E-15 | 3 | 72 | IPR011050 | Pectin lyase fold/virulence factor |
Gene3D | G3DSA:2.160.20.10 | 1.9E-9 | 33 | 72 | IPR012334 | Pectin lyase fold |
Pfam | PF00295 | 7.3E-7 | 34 | 72 | IPR000743 | Glycoside hydrolase, family 28 |
Pfam | PF13837 | 2.8E-13 | 88 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0004650 | Molecular Function | polygalacturonase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQFETVNRLT FEGGGYLDGQ GASWWSQNCA NNDGLKIQAP GDSPNTDGIH VEQSSNVKII 60 SVTIGTGNLD CLVAEMVDLQ KNSEGPRMGW TNHKVRHLIQ VVCNVDKEFT KEKWKYVSEL 120 MMQKGFSVSP QQCLDKFHVL VKRYKRMNDL LGIDTHESHT NCVENL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-13 | sequence-specific DNA binding transcription factors |