PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052407-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 355aa    MW: 40347.1 Da    PI: 6.9091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052407-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.7e-183481148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +lv++++ +G g+W++ +++ g++R++k+c++rw++yl
  PSME_00052407-RA 34 KGAWSAEEDSRLVEYIQTHGDGNWRSLPNKAGLRRCGKSCRLRWLNYL 81
                      79********************************************97 PP
2Myb_DNA-binding49.11.3e-1587130146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T++E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++
  PSME_00052407-RA  87 RGNITPDEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNT 130
                       7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8132981IPR017930Myb domain
SuperFamilySSF466893.67E-2931128IPR009057Homeodomain-like
SMARTSM007171.8E-133383IPR001005SANT/Myb domain
PfamPF002492.6E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-233588IPR009057Homeodomain-like
CDDcd001671.32E-93681No hitNo description
PROSITE profilePS5129424.17382136IPR017930Myb domain
SMARTSM007172.3E-1586134IPR001005SANT/Myb domain
PfamPF002495.5E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2389136IPR009057Homeodomain-like
CDDcd001671.98E-1091132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFLEIKAQFT HFLHCIASRN MGRAPCCSKV GVNKGAWSAE EDSRLVEYIQ THGDGNWRSL  60
PNKAGLRRCG KSCRLRWLNY LRPCIKRGNI TPDEEELIIR MHALLGNRWS IIAGRVPGRT  120
DNEIKNYWNT KLSRKLASIG IDPKTHKFIT VDGSNRAGDR FNQFRGEKQD CCSQRSVSNV  180
VKAGQSTELV IPNVHNLKAH IKVQYTEYIE SCSRSLPVES SNECCKYTPA DSAECASLIS  240
TSDSAEANLN SRDLHDNGCH WNEKQDEFAE YDVFKFFDVR NAENEICCND DDWVDEEDAD  300
QFVKKKQAAL QLGQGNKQID KQDKGNMESS CLNSHDFSHH ASSVPVISWE APFWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-253213625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022757570.18e-72myb-related protein 308-like
TrEMBLD5AC040.0D5AC04_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-67myb domain protein 6