PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052395-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YA

Protein Properties

Length: 207aa MW: 22648.2 Da PI: 8.3427

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052395-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.3e-32	24	80	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RR++Rak+e e+k k rkpylheSRh hA+rR+Rg+gGrF PSME_00052395-RA 24 DEPIYVNAKQYRGILRRRKSRAKAELENKF-VKVRKPYLHESRHLHAMRRARGCGGRF 80 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.6E-35	22	83	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.667	23	83	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-27	25	80	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.8E-23	26	48	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	28	48	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.8E-23	57	80	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MENHPHILGF QQGRMPLPSD VIEDEPIYVN AKQYRGILRR RKSRAKAELE NKFVKVRKPY 60 LHESRHLHAM RRARGCGGRF LNTKLLETTT GNADSGKLTG HHARAVSSSS TEALQSENGN 120 MNSSEVHGNS GLSGSEVTSM SESCPDGTSY SYTQGNGGYP YHHASSHLHF LGFSPLSDGS 180 VEVESGQGLG YAIKWIAAES CCDPMKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	24	84	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104913	0.0	BT104913.1 Picea glauca clone GQ02816_I15 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247679.1	2e-50	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_010247690.1	7e-51	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X3
TrEMBL	A0A0D6QWS4	3e-89	A0A0D6QWS4_ARACU; Uncharacterized protein
STRING	XP_010247679.1	9e-50	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	2e-37	nuclear factor Y, subunit A6