PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052134-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family EIL
Protein Properties Length: 442aa    MW: 50110.1 Da    PI: 6.0277
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052134-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3159.54.1e-49591571104
                       XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLra 93 
                       +el+k+mwkd+++l+r+ke++k ++    +  +++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lra
  PSME_00052134-RA  59 DELEKQMWKDRIRLRRIKEQRKGKY----H-SDTAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRA 146
                       79********************987....2.467799******************************************************** PP

                       XXXXXXXXXXX CS
              EIN3  94 WWkekvefdrn 104
                       WWkekve + n
  PSME_00052134-RA 147 WWKEKVEDNVN 157
                       *******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.9E-4459153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDGSQFRVEV MGIYDEMGYP GHLDLDMLHA PLEGDSMCCE NEGEVMHDEG LSEDDIDVDE  60
LEKQMWKDRI RLRRIKEQRK GKYHSDTAKH RQSQEQARRK KMSRAQDGIL KYMLKMMEVC  120
KAQGFVYGII PEKGKPVSGA SDNLRAWWKE KVEDNVNFIR KRKLPQEPPL EDQKVYTCPH  180
EQCPYHERQL GFLNQSLRNA HQSTCAYRTD LQGMGFQRPE AQENNSSFCL SGGKPNQLPV  240
QGKVSILEPQ QNNSLFYLST GKSDQLQVQG KVSIFPSEKE GQTVSNGTVT FNPLSTTSLA  300
IPGSSHQPIN ELLALYDSDS HQNKTSTLGN LQPVNDHNQL ELNMHPASQA REIFKITPDD  360
NFFGQGVMAG NNSNDSGSSM QQVMRGGLNL NQSRVYDQAF IHHCQEMNGD LKFVSPYNNI  420
SIDYAVPETL SKYDNSIWYF GA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00367DAPTransfer from AT3G20770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6773781e-171EF677378.1 Picea sitchensis clone WS02766_M08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH41e-146B8LNH4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.19e-52EIL family protein