PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051791-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 276aa    MW: 31921.4 Da    PI: 8.1198
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051791-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.84.7e-2641137185
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +Wt+++v++Li+++ +++e+   ++           +kk++W++vsk+m+erg+++sp+qC++k+++lnkryk+++++ +++ t++++++ ++
  PSME_00051791-RA  41 KWTDEMVKLLITVVLYVGEDGVPECsdgnkrksgmlQKKGKWKSVSKFMMERGCSVSPQQCEDKFNDLNKRYKRLNDILGRGtTCRVVENPAL 133
                       7**************999999977667778889999**********************************************77****99999 PP

          trihelix  82 fdql 85 
                       +d +
  PSME_00051791-RA 134 LDTM 137
                       9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2039129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MELKGKPTTS EEDEPSFTED GTDSHLSGGK SKKNSPWQRM KWTDEMVKLL ITVVLYVGED  60
GVPECSDGNK RKSGMLQKKG KWKSVSKFMM ERGCSVSPQQ CEDKFNDLNK RYKRLNDILG  120
RGTTCRVVEN PALLDTMPHL SAKTKEDHAP DNLNAEMLGV LQDTAKMPWE QREWIRNRTL  180
QLEEQKVSLQ AQAFELEKQR FKWQKICSKK DRELERMKLE NERMKLENEH MALQVRQSEL  240
DIDLKKSETS MTSVALVLER LQGRDQSELG RGQCLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6768661e-158EF676866.1 Picea sitchensis clone WS02756_I22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850180.25e-75putative uncharacterized protein DDB_G0287265
TrEMBLA0A445BV831e-97A0A445BV83_ARAHY; Uncharacterized protein
TrEMBLA0A445BVB45e-98A0A445BVB4_ARAHY; Uncharacterized protein
STRINGPOPTR_0016s11010.18e-80(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-57sequence-specific DNA binding transcription factors