PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051715-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34807.9 Da PI: 5.0159 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.4 | 7.9e-42 | 24 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk ++g++ l+++++i+++d+y+++P +Lp ++ +e++w+fF++r +++ +r+nr+t sgyWkatg+d++v PSME_00051715-RA 24 LPGFRFYPTEEELLDFYLKKTIHGRHqLNFDRIIPTLDLYRYDPCELPGLANVGERQWFFFVPRYHTK--CSRPNRMTVSGYWKATGSDRAVR 114 59*********************9996777778***************8888899********98765..68********************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkktLvfykg++++g+kt+W+m+eyrl PSME_00051715-RA 115 NELLQCIGLKKTLVFYKGKHSSGQKTEWIMNEYRL 149 *99999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-44 | 22 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.594 | 23 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-23 | 25 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAAILAETYN TGDVLQGQRE LMSLPGFRFY PTEEELLDFY LKKTIHGRHQ LNFDRIIPTL 60 DLYRYDPCEL PGLANVGERQ WFFFVPRYHT KCSRPNRMTV SGYWKATGSD RAVRNELLQC 120 IGLKKTLVFY KGKHSSGQKT EWIMNEYRLP DMISSAPKKK MDLVLCRIYR KAVTQKSMEQ 180 LVKHDDIERE KPVVTEMWIE QGFADEDDKE EPVISGDEGK SDSILDTVIC RSNPLTDANV 240 FPLPLGIGET KDEASIFDDL IPIICCEEIM DLKTPQTCYP PQLSVDYVFD QPMGRPCSIL 300 STP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-38 | 25 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-38 | 25 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-38 | 25 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-38 | 25 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-38 | 25 | 171 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-38 | 25 | 171 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-38 | 25 | 171 | 19 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093751.1 | 4e-62 | NAC domain-containing protein 35 | ||||
Swissprot | Q10S65 | 7e-56 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 1e-93 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | OMERI06G26300.1 | 4e-60 | (Oryza meridionalis) | ||||
STRING | XP_008791987.1 | 5e-61 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-56 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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