PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051633-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 393aa    MW: 43784.9 Da    PI: 6.9203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051633-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd+ l+ ++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00051633-RA 14 RGPWTPEEDKTLISYIQKKGHGSWRALPKLAGLLRCGKSCRLRWTNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding50.26e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T eE+  +++++  lG++ W++Ia+ ++ gRt++++k++w+++l
  PSME_00051633-RA  67 RGSFTREEERTIIQLHGILGNR-WSSIASQLP-GRTDNEIKNFWNTHL 112
                       899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.746961IPR017930Myb domain
SuperFamilySSF466897.75E-2911108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-161461IPR001005SANT/Myb domain
CDDcd001678.12E-101661No hitNo description
PROSITE profilePS5129425.42162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2565116IPR009057Homeodomain-like
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1467112IPR001005SANT/Myb domain
CDDcd001672.65E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRAPCCEKT GLKRGPWTPE EDKTLISYIQ KKGHGSWRAL PKLAGLLRCG KSCRLRWTNY  60
LRSDIKRGSF TREEERTIIQ LHGILGNRWS SIASQLPGRT DNEIKNFWNT HLKKRLLKMG  120
LDPSTYAPKS EANPSCPEGY EAMALTRHKA QWENARLEAE ARLSRESLLM SSNSAAGYHT  180
TNALENITMA SNNSPTDFFL KIWNSEAGKA FRKEPSCRII NNSCDNSCNV VDKNHPNGRG  240
YDQILSSDIT KNPRSSASIS SSSFASTQNS CDQSLNLNDK DMVNPALDDW IGDCIVQTPE  300
VLSCFADMTV GQTGHKAHEN SISSENLVSE QVHYKGISEL HLDNDNGSGN IGCMITELST  360
SFPQQFAWPW PDLHLEDDND CWSNVSIIAS AHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186101e-174BT118610.1 Picea glauca clone GQ04008_C24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255443.11e-96PREDICTED: transcription factor MYB3-like
SwissprotQ9M2D93e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM71e-124A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_010255443.15e-96(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-95myb domain protein 17