PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051587-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 694aa    MW: 79177.5 Da    PI: 9.1414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051587-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.3e-11529572147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEd  + +++ + G++ W++I r+++ gRt++++k +w+++
  PSME_00051587-RA 529 RGNFTEEED-SIMKLHSLRGNK-WSLIGRRLP-GRTDNEIKKYWNTH 572
                       566766666.5789********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470906.75E-9112179IPR002477Peptidoglycan binding-like
Gene3DG3DSA:3.40.390.105.5E-46113184IPR024079Metallopeptidase, catalytic domain
PfamPF014713.0E-8120173IPR002477Peptidoglycan binding-like
Gene3DG3DSA:3.40.390.105.5E-46249423IPR024079Metallopeptidase, catalytic domain
SuperFamilySSF554867.09E-31257422No hitNo description
SMARTSM002354.6E-22257421IPR006026Peptidase, metallopeptidase
PfamPF004133.7E-34261420IPR001818Peptidase M10, metallopeptidase
PRINTSPR001384.5E-12289304IPR021190Peptidase M10A
PRINTSPR001384.5E-12369394IPR021190Peptidase M10A
PRINTSPR001384.5E-12407420IPR021190Peptidase M10A
Gene3DG3DSA:1.10.10.603.0E-4502535IPR009057Homeodomain-like
SuperFamilySSF466898.98E-13514579IPR009057Homeodomain-like
PROSITE profilePS5129419.69524577IPR017930Myb domain
SMARTSM007178.3E-8528575IPR001005SANT/Myb domain
PfamPF002491.2E-9529572IPR001005SANT/Myb domain
CDDcd001672.05E-7531573No hitNo description
Gene3DG3DSA:1.10.10.601.8E-17536574IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0031012Cellular Componentextracellular matrix
GO:0003677Molecular FunctionDNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTMKIRYLWI GLTALVMALV IFMAKTKTAS NGKAKVMNKP IKNFRDLRHL REHNRPATPL  60
FNYHLEAALP LYQSCFNLSR PSKFDVLLNF KKGEESCFNL SRPSKFDVLL NFKKGDEQNF  120
KRFLAKLGYL KRFRGQHRPP TTMFDDGLEA TVRLYQQRWK LSVTGFLDKA TLDTFRIPRN  180
VGNEQRVVLS REPKTRSRTS NKTMRVPRRR RRTQEEVGNG QTLVLAPQQA DTARARSFSC  240
NRSLSERKVK TWNLLDGKPM WKSRRDLTYS FLNFSESAVL SKKDIRSAVA SAFETWAAVI  300
QLNFNETEDF AAANIKILFR DGPPFDGPLG ILAYGYPPEY GEFGLDSAEI WTVNMTATDD  360
KRAVDLQTVA LHEIGHLIGL NHSKDKSSVM FGSVEKDALH DTVKHRLTCD DIEGAISLYG  420
ARTLENHLGP VAAEECPHLC IEDEDDHAPP LVEDDQAPLV FVFSFSAACI LLVLSWLWLI  480
KELSDLFFGW LAFLMCCQDA WRWRCLSKAA GLLRCLKSCW LRWINHLQRG NFTEEEDSIM  540
KLHSLRGNKW SLIGRRLPGR TDNEIKKYWN THIKLKLLSR GFDRQTHRSL CSNTTLGSPP  600
ANFDHEVSAL QCPRPEEITD FFPRSRSISI AEPVASKDEE HPELNLDSSL AENRAVDSNF  660
NSGPGAWCDD KGQQKNSHGM FHLQGRAVAA ETFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnc_A8e-212544201162NEUTROPHIL COLLAGENASE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012542e-36BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
GenBankEF6010682e-36EF601068.1 Picea glauca R2R3-MYB transcription factor MYB5 mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.18e-39myb domain protein 6