PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00051427-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 396aa MW: 44007.8 Da PI: 4.6337

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00051427-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	4	25	23	45
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W++Ia++++ +Rt++++k++w+ PSME_00051427-RA 4 RWALIAAHIP-RRTDNEIKNYWN 25 4*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.271	1	32	IPR017930	Myb domain
SuperFamily	SSF46689	2.12E-6	3	34	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-10	3	33	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-6	4	26	IPR001005	SANT/Myb domain
CDD	cd00167	1.26E-5	4	25	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MISRWALIAA HIPRRTDNEI KNYWNSSIKK KLKLKYHFSN TNSKCNAPAS RCDRICRTDS 60 LVSHTHDDFT SSRSAQPCLD AMPERYQTRM NTFNAVTTGE NQFCDLGVLE LKQEQLVDQN 120 DDINQLISYF QNWIDDASTL LSTHESVSSH AAFQSLILPA QGLLHTCNTT KSPTCNELII 180 ESCRTTVPPV EAPGSANYSL GSIAITTPAA VEAEFLKEKI ENDGSSTSQY SCSNPTGYHC 240 PPVVDPGAYI VHEAGVSIVE DYESLYDKTT HQAACPQLSF LSQFGAHAIK WPVGHFNDFQ 300 AENDCRDRLD LRYDLNLGIP KYIYNDIKQR SCGSLQINEG GEIGDQREFS IIPHEEPNEN 360 PIPGILGGGG SAEFEFGDDI YNLSTAAVDL DEIYFS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MISRWALIAA HIPRRTDNEI KNYWNSSIKK KLKLKYHFSN TNSKCNAPAS RCDRICRTDS  60
LVSHTHDDFT SSRSAQPCLD AMPERYQTRM NTFNAVTTGE NQFCDLGVLE LKQEQLVDQN  120
DDINQLISYF QNWIDDASTL LSTHESVSSH AAFQSLILPA QGLLHTCNTT KSPTCNELII  180
ESCRTTVPPV EAPGSANYSL GSIAITTPAA VEAEFLKEKI ENDGSSTSQY SCSNPTGYHC  240
PPVVDPGAYI VHEAGVSIVE DYESLYDKTT HQAACPQLSF LSQFGAHAIK WPVGHFNDFQ  300
AENDCRDRLD LRYDLNLGIP KYIYNDIKQR SCGSLQINEG GEIGDQREFS IIPHEEPNEN  360
PIPGILGGGG SAEFEFGDDI YNLSTAAVDL DEIYFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-10	myb domain protein 103