PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051333-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 331aa    MW: 37340.8 Da    PI: 4.8765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051333-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-122267146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +g+WT eEd +l  +++++G g+W+  a+  g++Rt+ +c++rw +
  PSME_00051333-RA 22 KGPWTVEEDMQLTGYIRLYGEGRWNFLAKATGLKRTGRSCRLRWVN 67
                      79******************************************87 PP
2Myb_DNA-binding46.11.1e-1475118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + T eE+ l+++++ ++G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00051333-RA  75 RSKITSEEERLIIKLHGRWGNR-WSHIAQSLP-GRTDNEIKNYWRT 118
                       6678******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7661769IPR017930Myb domain
SuperFamilySSF466892.07E-2820116IPR009057Homeodomain-like
SMARTSM007171.5E-112171IPR001005SANT/Myb domain
PfamPF002499.4E-112267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-202376IPR009057Homeodomain-like
CDDcd001677.55E-92469No hitNo description
PROSITE profilePS5129422.51570124IPR017930Myb domain
SMARTSM007175.0E-1374122IPR001005SANT/Myb domain
PfamPF002495.2E-1376118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2177124IPR009057Homeodomain-like
CDDcd001677.49E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPNRIWSGAS GVEDEDEAET RKGPWTVEED MQLTGYIRLY GEGRWNFLAK ATGLKRTGRS  60
CRLRWVNSLR PGLKRSKITS EEERLIIKLH GRWGNRWSHI AQSLPGRTDN EIKNYWRTRI  120
KGKLNLQDES GSCGMDVDSP EQFEHSFCLP TSSQRPPDHD SAAPASTSIP PQSTEEVANQ  180
IKRTLYLQDD ISPQVNLIHE LNGDYDVFMQ GESRHGPTSS QANDDGRQGA ANSHQDLEAS  240
ENQLFENSLL YNFSAGSLES LLYSSEFCAD GTTQDGGIPA SCSYMVASPE AFSDSEAYLS  300
RYSDVLWNMD EEDDRFNGSK HHVSRNDRRS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-26221244105C-Myb DNA-Binding Domain
1msf_C1e-26221244105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-49myb domain protein 21