PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051173-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 274aa    MW: 31186.9 Da    PI: 6.392
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051173-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.96.4e-42391391100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       aCaaCk++rrkC++dC+lapyfp +qp++f n+hklFG+sn+l++lk+lp+++ ++dam+s+vy+A+ar +dPv+G++g+i  lq q+e+lk+
  PSME_00051173-RA  39 ACAACKYQRRKCSPDCPLAPYFPPDQPRQFLNAHKLFGVSNILRILKQLPDDRqKSDAMKSMVYQANAREKDPVHGCFGIIVMLQTQVERLKE 131
                       7************************************************776659************************************** PP

            DUF260  93 elallkee 100
                       el+l++++
  PSME_00051173-RA 132 ELELVRSQ 139
                       ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.10538140IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4039137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MHRIRGEADL GIPLNMADTE RLDRDPLASS TGKGGIGQAC AACKYQRRKC SPDCPLAPYF  60
PPDQPRQFLN AHKLFGVSNI LRILKQLPDD RQKSDAMKSM VYQANAREKD PVHGCFGIIV  120
MLQTQVERLK EELELVRSQV MFFDQQFQNK ADPYNDNNLS TQQQQQQQQH QQQQQQQQLQ  180
SLGNSAGVVP ASWIYPSYVH SPYVGYEGQG IYRQCNLRPN HNLLEYDQRQ DYIDSKEAYE  240
SSAESSLKDS QCLMESVADH EQLKSAAALF TLTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-36351417112LOB family transfactor Ramosa2.1
5ly0_B6e-36351417112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010255986.19e-54(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-35LOB domain-containing protein 27