PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051161-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 450aa    MW: 49705.3 Da    PI: 6.5564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051161-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09303331129
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk 29 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P 
  PSME_00051161-RA 303 QRMTHIAVERNRRKQMNEHLAVLRSLMPG 331
                       79**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.71E-9299335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-7300336No hitNo description
Gene3DG3DSA:4.10.280.104.8E-8302332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.331302383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7303331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MPKNSTLYGF WCIMVIVVWV KTFSWSAVAQ SVKLGRWKLL VLNGGDCSEL ETLRLRNIHI  60
QGGRPSNLAA ATDPSLLIPS LSINLIESGE NQEATPMGDI LCDIFSSHDF SHGNLAAHSP  120
VQDLFGILDF LETENHQDAS RFISLIEEES STCNKNGDNF TEVSHLHGLP VLEQEPELEP  180
ETDHNILNFS FSVNPGGHGC SDTNVPQSIN SPSQKRSDSV ASEIKDSHKF IGADQDYAVK  240
TRIKSESCKS ILQKSKACEL RSHIHPSDFS ESETDQGLIK QKHKRLKVLA TATSDQSEGD  300
GQQRMTHIAV ERNRRKQMNE HLAVLRSLMP GFYVQRVLPP VSPRPLPPSP RTPQPGNPYR  360
PKNMQSFMPC SSIDSNFETV KELVANSKSA IADVEVKIAG SNALLKTLSH KIPGQILKIV  420
NALENLSLEI LHLNISTIDD TVLNSLTLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303314RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1237390.0BT123739.1 Picea sitchensis clone WS04716_J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABX01e-166D5ABX0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-26bHLH family protein