PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051091-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 162aa MW: 18776.5 Da PI: 9.2335 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.4 | 2.5e-08 | 95 | 116 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++ + G+Ck G +C FaHg PSME_00051091-RA 95 ETCVNYKK-GYCKNGLTCEFAHG 116 6799****.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.822 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-5 | 96 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MAMDISISSP VLSPQCAFCS PSSNGQGIAT WIDDNDAKTF LNTCGTQNQS SDELRMYKFK 60 VVICMRDPGH DWTRCPFAHR GERARKRHPS LYCGETCVNY KKGYCKNGLT CEFAHGWFES 120 WLHPHRYRTK HCKHGVNCNR RVFFLRMEMK KSVFHQHSVP PK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110126 | 1e-130 | BT110126.1 Picea glauca clone GQ03216_L21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596057.1 | 3e-35 | zinc finger CCCH domain-containing protein 35-like | ||||
Swissprot | Q6L4N4 | 1e-33 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A2I0X2J8 | 8e-33 | A0A2I0X2J8_9ASPA; Zinc finger CCCH domain-containing protein 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 4e-35 | C3H family protein |
Publications ? help Back to Top | |||
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