PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00051072-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 23336.7 Da PI: 9.6107 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+++++ lG++ W++Ia+++ gRt++++k++w+++ PSME_00051072-RA 25 RGNFSEEEDELIIKLHSILGNK-WSLIASRLT-GRTDNEIKNYWNTH 69 89********************.********9.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 1 | 19 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 5 | 32 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.22E-22 | 6 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.705 | 20 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-17 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 25 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.60E-13 | 27 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 33 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MRRLQRCGKS CRLRWINYLR PDLKRGNFSE EEDELIIKLH SILGNKWSLI ASRLTGRTDN 60 EIKNYWNTHI KRKLLKRGMD PYTHVPIVAD HGSFGFSTEN RVLPKRRLKP SEVLTDFFQK 120 QTPGISSEPK IISRSDDQAD DADVNLDLSI TLPSLRLSQI QGASSSSKEL SSGIRPSNKC 180 IQQDHKREIC CHIGLQTVGG SCCSGC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 6 | 74 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826645.1 | 4e-53 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 1e-47 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A222UBG5 | 6e-61 | A0A222UBG5_GINBI; R2R3MYB3 | ||||
STRING | ERM93882 | 1e-52 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-49 | myb domain protein 4 |