PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050641-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 376aa    MW: 42577.3 Da    PI: 8.9086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050641-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-1619941899
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +p  f++   ++   +k+  le +sg++W v++    +s ++ + +GW+ Fv++n L+ gDf+vFk++g+s f  +v++f +
  PSME_00050641-RA 19 IPPAFVRLLRYQV--HKDAFLEGPSGQVWLVTV--HCTSTGMAFDQGWQTFVSDNSLDIGDFLVFKYVGKSHF--MVQIFGR 94
                      7888887666663..4589**************..88888899**************************9999..****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.3E-9895IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-201797IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-151892No hitNo description
Gene3DG3DSA:2.40.330.101.1E-181897IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-141994IPR003340B3 DNA binding domain
PROSITE profilePS5086312.6891995IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MMFNLQPRKV VLLPIFPRIP PAFVRLLRYQ VHKDAFLEGP SGQVWLVTVH CTSTGMAFDQ  60
GWQTFVSDNS LDIGDFLVFK YVGKSHFMVQ IFGRSGCEKR DAFNVRKSSA YCMNDRTELR  120
QDSRRRNTNM ENFRSPLDKT GISLAHDDTN DEGDEVQVLE TAPNTTFMGP NSMQINNTRK  180
KARIYSGYNS ETLCNNLKSK DAVGTKEHIV KLGLSTTNYL EVEKEAGFPI HQPIVIDSEE  240
ERLQGTLTAD DSKMSVGEGD SSPSIVVSRD KPLRHAVQLV KDVKTAKQTH HAAKDEGKNY  300
VSTHYVSRRR PVTQKEREKA LEAAQSFKSR KPFALLTMKQ SQVYQGFWLV SSPPLYLLPY  360
CYVSLTTHAE ICTDAH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-17B3 family protein