PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050397-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 348aa    MW: 38826.8 Da    PI: 8.1656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050397-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-131460147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg+W+++Ed +l ++++++G g W++ +++ g++R+++ c+ rw +y
  PSME_00050397-RA 14 RGPWSAQEDMILSEYIRLHGDGGWRKLPKKAGLNRCGNGCRIRWVNY 60
                      89*******************************************99 PP
2Myb_DNA-binding47.34.7e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l++  +++lG++ W++Ia +++ gRt++++k++w+ +l
  PSME_00050397-RA  67 RGNISSDEEDLIIMMHRLLGNR-WSLIAGRLP-GRTANEIKNHWNRHL 112
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129412.974961IPR017930Myb domain
SuperFamilySSF466892.2E-2512108IPR009057Homeodomain-like
SMARTSM007171.7E-91363IPR001005SANT/Myb domain
PfamPF002498.7E-121460IPR001005SANT/Myb domain
CDDcd001671.01E-61661No hitNo description
PROSITE profilePS5129424.41262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2165116IPR009057Homeodomain-like
SMARTSM007173.4E-1466114IPR001005SANT/Myb domain
PfamPF002493.5E-1367112IPR001005SANT/Myb domain
CDDcd001675.13E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVRSPCCSKE ELNRGPWSAQ EDMILSEYIR LHGDGGWRKL PKKAGLNRCG NGCRIRWVNY  60
VRPSIKRGNI SSDEEDLIIM MHRLLGNRWS LIAGRLPGRT ANEIKNHWNR HLSKKVSINR  120
SQTNNSQNLI KTCSKSPSVI QNHVLKSSTP IRIESDYWVK HSEMVSPNGW NGSGRSNGRI  180
SSGDGFFKLS STIKKSTSSS KSWCNLLVND SIREDDLAVT NPGLDVNLLQ IQDVTNFSCS  240
MFTSLAVQQS PHCDNFAGHA APLGESLCDL KELPSPQCNM ISSPSISWTE FGFEEFCKGP  300
ATSLGAKTAG FEGMYCNIGF PSANDQGIEE TYGYNSQHVD WIRELDYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-108B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-57myb domain protein 3