PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049812-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Nin-like

Protein Properties

Length: 486aa MW: 53577.2 Da PI: 5.7305

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049812-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89	4e-28	325	374	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +is ++ls+yFs+pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl PSME_00049812-RA 325 TDISYSELSQYFSMPITQAARELKVGLTVLKKKCREFGIPRWPHRKMKSL 374 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.713	310	394	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-22	327	374	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MKPLKEDPDS RNSDHEFWQS ILDGLDEAFV IAEPIDTINS SELCEISPDR SWAAAEQHLE 60 FQDHGKQLLG NNYGLVQALS DPSEVLEPVT GCTDHPKDHP HAHAQANWNL VEVPTNETCT 120 NSNIKLTEAV GNLKVEPGNA FSEGTPELSP HIFENLDFCS LPSFSSIKGG MPALPTPNSI 180 TEGLDPQMCN TKPEALISYH DNSIMGMIRC NLSGEIRHAG QVNEVMIAGG LPDQLAGNVD 240 ERMSGGLCWD QLQGYCKNSL SHHKLLPISS NLIEGMAAKH SIEDQPGPSS RSWSRLNQLC 300 ESRPMNATRK EAVMPLSGPV ERNNTDISYS ELSQYFSMPI TQAARELKVG LTVLKKKCRE 360 FGIPRWPHRK MKSLESLIHN IQELSKTNGG LSQARLSNAV QILEEQKKLM EESPGIELAE 420 RTKRLRQACF KANYKKRRQM MCAGRIANNN NNSDTSSSSN QVTEFPPQPS TCSSISDCSG 480 SISSLS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MKPLKEDPDS RNSDHEFWQS ILDGLDEAFV IAEPIDTINS SELCEISPDR SWAAAEQHLE  60
FQDHGKQLLG NNYGLVQALS DPSEVLEPVT GCTDHPKDHP HAHAQANWNL VEVPTNETCT  120
NSNIKLTEAV GNLKVEPGNA FSEGTPELSP HIFENLDFCS LPSFSSIKGG MPALPTPNSI  180
TEGLDPQMCN TKPEALISYH DNSIMGMIRC NLSGEIRHAG QVNEVMIAGG LPDQLAGNVD  240
ERMSGGLCWD QLQGYCKNSL SHHKLLPISS NLIEGMAAKH SIEDQPGPSS RSWSRLNQLC  300
ESRPMNATRK EAVMPLSGPV ERNNTDISYS ELSQYFSMPI TQAARELKVG LTVLKKKCRE  360
FGIPRWPHRK MKSLESLIHN IQELSKTNGG LSQARLSNAV QILEEQKKLM EESPGIELAE  420
RTKRLRQACF KANYKKRRQM MCAGRIANNN NNSDTSSSSN QVTEFPPQPS TCSSISDCSG  480
SISSLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-40	RWP-RK domain-containing protein