PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049694-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 349aa    MW: 40134.8 Da    PI: 5.0498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049694-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.33.4e-41161221106
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeelv++yLkkkv++k+++l +vik+vd+yk+ePwdL++  k+   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk
  PSME_00049694-RA  16 VPPGFRFHPTDEELVDYYLKKKVASKRIDL-DVIKDVDLYKLEPWDLEErcKIGYeEQTEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDK 107
                       69****************************.9***************953433333666********************************** PP

               NAM  91 evlskkgelvglkktL 106
                       ++++ k +l+g++ktL
  PSME_00049694-RA 108 AIYA-KLKLIGMRKTL 122
                       ****.999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4113134IPR003441NAC domain
PROSITE profilePS5100536.52116175IPR003441NAC domain
PfamPF023656.5E-1917123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDDLNSYDMD NLQSRVPPGF RFHPTDEELV DYYLKKKVAS KRIDLDVIKD VDLYKLEPWD  60
LEERCKIGYE EQTEWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKAIY AKLKLIGMRK  120
TLEEGWVVCR AFKKRSTAQK KASDRDFSAS SAFYEVDQNS SLPEFDSLDM KLPQQQDHGH  180
QFGYQLQQFA GCKQELEPLD YQLEHNPFLQ LPQLESPKLP CNANSSSSSA GNRPEYSMTS  240
LLESANMEML LPHSTCTGPH EQQQQQQVGA FYSEEQVYTD WRMLDKFVAS QLSQEDVIDQ  300
VARFSNGLNY NPMPDTGSLL RQNKLLSEAD YAAASNSNSY GDIFWGFGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-351612215118Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452724.11e-100NAC domain-containing protein 7
SwissprotQ9SL413e-90NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A3S3MIM31e-104A0A3S3MIM3_9MAGN; NAC domain-containing protein 7
STRINGXP_010259028.15e-98(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.13e-86vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]