PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049691-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 288aa    MW: 31358.3 Da    PI: 5.2345
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049691-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP23.22.1e-07861114166
               TCP  41 fdkdsktieWLlqqakpaikeltgts 66 
                       +  d++ti+WLl++ kpai+ +tg +
  PSME_00049691-RA  86 HELDGETIQWLLNKVKPAIIVATGAC 111
                       6679*******************983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525407.19E-19171IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.1E-15171IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004141.6E-49172287IPR002119Histone H2A
PRINTSPR006201.5E-27178200IPR002119Histone H2A
SuperFamilySSF471131.19E-30180264IPR009072Histone-fold
PfamPF001251.8E-12187255IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.109.2E-39189286IPR009072Histone-fold
CDDcd000741.02E-46190283No hitNo description
PRINTSPR006201.5E-27208223IPR002119Histone H2A
PRINTSPR006201.5E-27223236IPR002119Histone H2A
PRINTSPR006201.5E-27237251IPR002119Histone H2A
PfamPF162115.0E-9257287IPR032454Histone H2A, C-terminal domain
PRINTSPR006201.5E-27264282IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLKNPPILIL DEATSALDSE SEALDMFMVG RTMVVVADRL STIRKADMVA VVQQGSIWDM  60
GTHDELISKD NDGADSTLIR LQETTHELDG ETIQWLLNKV KPAIIVATGA CVVPTLPLPI  120
VGSGTCTVPA FPVSILGSGK LYKHDMGDDR AEIDMRDPFE SFKDVVSLFA ERAIGDKIIE  180
KRPEIPEEKF PVGPIHRLLK SRVSANGRVG ETAAVYSAAI LEYLTAEVLE LAGNASKDIK  240
VKCITPRHLQ LTIRGDEELD TLIKGTIVCG GVIPHIHKSL INKSTKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z30_C2e-5118228723128Histone H2A.Z
5z30_G2e-5118228723128Histone H2A.Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1059151e-113BT105915.1 Picea glauca clone GQ02830_A19 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-07TCP family protein