PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049662-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 484aa MW: 52800.8 Da PI: 10.3775

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049662-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	9.4e-15	208	295	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea + +l+rg+lk+++W++v++++ + ++ +qCk++++ l+k+yk +k + + ++ s++p+f++l+ PSME_00049662-RA 208 CWSEGATNTLIEAWGARYVELNRGNLKQKHWKDVADAVsgreNCSKTGKTDVQCKNRLDTLKKKYKLEKSRIFN--NGGNSKWPFFNKLD 295 7***********************************97666666677889*************99998..466779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-25	207	297	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
KLPAGRGVIT GEGEAREAPL VVPHFRQAEH LWPDSRPGCP THRPPGAGIS GGQVGRQLLF 60 DPIGAIHLTP TSGRRTYRRC GEAVFLGWVS VLVNTPLVRP SFHLPCSTAP EMPARPLSLI 120 SSPAKRTKES RAEGNGRPEA EARKRAPDTS PSGKVATTAP ARDGMAGVGI SVSVATPVAN 180 GIAETLVTAV AGNGGGGGHG HGHGRDDCWS EGATNTLIEA WGARYVELNR GNLKQKHWKD 240 VADAVSGREN CSKTGKTDVQ CKNRLDTLKK KYKLEKSRIF NNGGNSKWPF FNKLDELIGP 300 SRKHQHHHQQ PKPLAMVTPS GSKPLKRPPD EAPHMTMIPP VAINSHHQHL HMTVAPNSAS 360 SKSDETPDTT DSYPNGLDMA GNGKSNPFKK KKFLHDIGNN NNNINNINNS SPFKELTGAI 420 LKFGEVYERV ESSKLQQFML LEKQRMEFIR DLEIQRMQLF MQTQVELTKM KHGKHGNNTV 480 SNSL

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

KLPAGRGVIT GEGEAREAPL VVPHFRQAEH LWPDSRPGCP THRPPGAGIS GGQVGRQLLF  60
DPIGAIHLTP TSGRRTYRRC GEAVFLGWVS VLVNTPLVRP SFHLPCSTAP EMPARPLSLI  120
SSPAKRTKES RAEGNGRPEA EARKRAPDTS PSGKVATTAP ARDGMAGVGI SVSVATPVAN  180
GIAETLVTAV AGNGGGGGHG HGHGRDDCWS EGATNTLIEA WGARYVELNR GNLKQKHWKD  240
VADAVSGREN CSKTGKTDVQ CKNRLDTLKK KYKLEKSRIF NNGGNSKWPF FNKLDELIGP  300
SRKHQHHHQQ PKPLAMVTPS GSKPLKRPPD EAPHMTMIPP VAINSHHQHL HMTVAPNSAS  360
SKSDETPDTT DSYPNGLDMA GNGKSNPFKK KKFLHDIGNN NNNINNINNS SPFKELTGAI  420
LKFGEVYERV ESSKLQQFML LEKQRMEFIR DLEIQRMQLF MQTQVELTKM KHGKHGNNTV  480
SNSL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102167	1e-127	BT102167.1 Picea glauca clone GQ0167_M06 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6QX65	3e-99	A0A0D6QX65_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	9e-42	sequence-specific DNA binding transcription factors