PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048913-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21827.7 Da PI: 6.0947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 1.9e-42 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++ e+r+d++sslvyeA ar+rdPvyG++g++ +l+qql+ l+a+ PSME_00048913-RA 22 PCAACRTLRRRCGDKCVLAPYFPPNDPQKFATVHRVFGASNIIRILQDVTSEHRDDTVSSLVYEATARLRDPVYGCAGTVCQLHQQLCDLQAQ 114 7******************************************************************************************** PP DUF260 94 lallkeel 101 la++++++ PSME_00048913-RA 115 LATAQAQI 122 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.501 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-41 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MWRQQIYKMS EGTPIRTKVA TPCAACRTLR RRCGDKCVLA PYFPPNDPQK FATVHRVFGA 60 SNIIRILQDV TSEHRDDTVS SLVYEATARL RDPVYGCAGT VCQLHQQLCD LQAQLATAQA 120 QILNLHCQQA NLMEFLIASN SSLGKGGETF DCDYDEPLQG SSWTDSDSPV SQVTDGEKDV 180 NALLQELFMC SRYWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-39 | 12 | 129 | 1 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-39 | 12 | 129 | 1 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251265.1 | 9e-59 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-50 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 3e-58 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | Solyc11g072470.1.1 | 4e-58 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 3e-41 | LOB domain-containing protein 11 |